parANOVA/Volcano for Data QC (Shiny App)
Upload log2(abundances) .csv (cleanDat) [max 50 MB]
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Upload traits .csv (numericMeta)
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Grouping variable for ANOVA [populates from numericMeta columns w/ 2 to 8 factor levels]
Group
Disease
Two-group correction method
[only relevant for exactly 2 groups being compared]
Run ANOVA Analysis (15-20 sec)
Output file prefix
Output file suffix
Download ANOVA Result
Volcano Pairwise Comparison (ANOVAout column) to Plot
[Select after ANOVA Table Calc]
Boxplot Point Color Group Trait [populates from numericMeta columns w/ 2 to 20 factor levels]
None
P value Threshold for Signif. to count DEPs:
Min. Fractional Change (from 0=no min change):
Flip (x) Volcano Comparison?
Label in PDF the top N proteins (up & down)
Standardize x-y scale for all volcanoes?
Center Y axis of Volcano?
(re)Generate Volcano Plot
Download Volcano Plot PDF